If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ), 'gf_id' => 'HOM05D000615', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000615' ), 'data_identifier' => 'HOM05D000615', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000615', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '927', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p32420' => 'bna', 'A07p34350' => 'bna', 'Aa31LG1G1650' => 'aar', 'Aa31LG1G1660' => 'aar', 'Aa31LG5G10810' => 'aar', 'Aa31LG5G10820' => 'aar', 'Actinidia05962' => 'ach', 'Actinidia05963' => 'ach', 'Actinidia05964' => 'ach', 'Actinidia05965' => 'ach', 'Actinidia05966' => 'ach', 'Actinidia07903' => 'ach', 'Actinidia07904' => 'ach', 'Actinidia11915' => 'ach', 'Actinidia15116' => 'ach', 'Actinidia15117' => 'ach', 'Actinidia16212' => 'ach', 'Actinidia16213' => 'ach', 'Actinidia19367' => 'ach', 'Actinidia36138' => 'ach', 'Actinidia36139' => 'ach', 'Actinidia37453' => 'ach', 'Ah.02g130320' => 'amhyb', 'Ah.03g133490' => 'amhyb', 'Ah.06g191260' => 'amhyb', 'Ah.06g191270' => 'amhyb', 'Ah.08g218430' => 'amhyb', 'Ah.15g095500' => 'amhyb', 'Ah.16g109310' => 'amhyb', 'AL2G26530' => 'aly', 'AL3G10470' => 'aly', 'AL3G10480' => 'aly', 'Aqoxy3G01292' => 'aox', 'Aqoxy5G01963' => 'aox', 'Aqoxy5G03656' => 'aox', 'Aqoxy5G03658' => 'aox', 'Aqoxy5G03659' => 'aox', 'Aqoxy5G03661' => 'aox', 'Aqoxy5G03665_Aqoxy5G03666' => 'aox', 'arahy.Tifrunner.gnm1.ann1.05TZH8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0FAD3S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0HN7YC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.187MEP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZQ329' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4568JG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D3FVT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4IKS7C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SV6CB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5Q5L35' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68YCJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6KSP6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7FGL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.89XXPU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90SEXW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2IAS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T88Y8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQ86VK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAUG6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CL7BL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1TD5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIX3WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZYM2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GVM1TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MH6BRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9PH3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NM4QXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NQM7VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QC9QN3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDRF0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXAW9M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V50W2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WR02GX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X65NL3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XLU9KK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YGY15Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YILV44' => 'arhy', 'AT1G67790' => 'ath', 'AT3G01670' => 'ath', 'AT3G01680' => 'ath', 'ATR0199G005' => 'atr', 'ATR0199G009' => 'atr', 'ATR0199G022' => 'atr', 'ATR0199G028' => 'atr', 'ATR0199G029' => 'atr', 'Atru.chr1.3643' => 'acertr', 'Atru.chr1.3644' => 'acertr', 'Atru.chr1.3655' => 'acertr', 'Atru.chr11.2178' => 'acertr', 'Atru.chr11.2179' => 'acertr', 'Atru.chr11.2181' => 'acertr', 'Atru.chr6.2451' => 'acertr', 'Atru.chr9.1810' => 'acertr', 'AUR62001232' => 'cqu', 'AUR62005518' => 'cqu', 'AUR62005519' => 'cqu', 'AUR62018131' => 'cqu', 'AUR62022088' => 'cqu', 'AUR62022649' => 'cqu', 'AUR62024223' => 'cqu', 'AUR62024224' => 'cqu', 'AUR62032406' => 'cqu', 'AUR62033759' => 'cqu', 'AUR62034136' => 'cqu', 'AUR62034138' => 'cqu', 'AUR62034271' => 'cqu', 'AUR62035518' => 'cqu', 'AUR62035519' => 'cqu', 'AUR62036354' => 'cqu', 'AUR62041634' => 'cqu', 'AUR62041635' => 'cqu', 'AUR62041636' => 'cqu', 'BcaB03g15157' => 'bca', 'BcaC01g04533' => 'bca', 'BcaC02g12832' => 'bca', 'BcaC05g30420' => 'bca', 'BcaC05g30421' => 'bca', 'BcaC05g30459' => 'bca', 'BcaC05g30460' => 'bca', 'BcaC08g46206' => 'bca', 'BcaNung05587' => 'bca', 'BNapus_Darmor_BZH_scaffold_229p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_229p00030' => 'bna', 'BolC3t16216H' => 'bol', 'BolC6t39206H' => 'bol', 'BraA03t12412Z' => 'bra', 'BraA07t31065Z' => 'bra', 'BraSC76t46603Z' => 'bra', 'BraSC76t46604Z' => 'bra', 'C03p39480' => 'bna', 'C06p42180' => 'bna', 'C09p74980' => 'bna', 'C09p75000' => 'bna', 'CAN.G126.93' => 'can', 'CAN.G43.22' => 'can', 'CAN.G43.23' => 'can', 'CANSAT01G0408' => 'cansat', 'CANSAT01G1199' => 'cansat', 'CANSAT01G1720' => 'cansat', 'CANSAT01G2498' => 'cansat', 'CANSAT01G2798' => 'cansat', 'CANSAT01G3271' => 'cansat', 'CANSAT01G3283' => 'cansat', 'CANSAT21G1809' => 'cansat', 'CANSAT56G3052' => 'cansat', 'CANSAT78G0132' => 'cansat', 'CANSAT78G0656' => 'cansat', 'CANSAT78G1200' => 'cansat', 'CANSAT78G1350' => 'cansat', 'CANSAT78G1416' => 'cansat', 'CANSAT78G1655' => 'cansat', 'CANSAT78G2026' => 'cansat', 'CANSAT80G1326' => 'cansat', 'CARHR058060' => 'chi', 'CARHR060420' => 'chi', 'CARHR075240' => 'chi', 'CARHR075250' => 'chi', 'Carub.0002s1424' => 'cru', 'Carub.0003s0038' => 'cru', 'Carub.0003s0039' => 'cru', 'Ca_07012_v3' => 'car', 'Ca_09829_v3' => 'car', 'Ca_09831_v3' => 'car', 'Ca_09832_v3' => 'car', 'Ca_09833_v3' => 'car', 'Ca_11761_v3' => 'car', 'Ca_16113_v3' => 'car', 'Ca_17790_v3' => 'car', 'Ca_26929_v3' => 'car', 'Ca_29551_v3' => 'car', 'Ca_29630_v3' => 'car', 'Cc04_g10900' => 'ccan', 'Cc04_g10910' => 'ccan', 'Cc11_g05600' => 'ccan', 'Cc11_g16070' => 'ccan', 'Cc11_g16080' => 'ccan', 'CDE02G3313' => 'cde', 'CDE06G2721' => 'cde', 'CDE08G0947' => 'cde', 'Cfa004423' => 'cfa', 'Cfa004435' => 'cfa', 'Cfa004436' => 'cfa', 'Cfa004437' => 'cfa', 'Cfa004438' => 'cfa', 'Cfa004439' => 'cfa', 'Cfa004440' => 'cfa', 'Cfa007314' => 'cfa', 'Cfa007315' => 'cfa', 'Cfa007319' => 'cfa', 'Cfa007321' => 'cfa', 'Cfa008385' => 'cfa', 'Cfa008386' => 'cfa', 'Cfa008387' => 'cfa', 'Cfa008388' => 'cfa', 'Cfa008390' => 'cfa', 'Cfa009249' => 'cfa', 'Cfa009250' => 'cfa', 'Cfa009252' => 'cfa', 'Cfa009253' => 'cfa', 'Cfa009254' => 'cfa', 'Cfa009516' => 'cfa', 'Cfa013104' => 'cfa', 'Cfa021003' => 'cfa', 'Ciclev10000431m.g' => 'ccl', 'Ciclev10015478m.g' => 'ccl', 'Ciclev10019109m.g' => 'ccl', 'Ciclev10019121m.g' => 'ccl', 'Ciclev10019128m.g' => 'ccl', 'Ciclev10023346m.g' => 'ccl', 'Ciclev10030798m.g' => 'ccl', 'Ciclev10030843m.g' => 'ccl', 'CiPaw.01G170900' => 'cil', 'CiPaw.01G190800' => 'cil', 'CiPaw.01G190900' => 'cil', 'CiPaw.01G191000' => 'cil', 'CiPaw.01G191100' => 'cil', 'CiPaw.01G191200' => 'cil', 'CiPaw.01G191300' => 'cil', 'CiPaw.01G191400' => 'cil', 'CiPaw.01G191700' => 'cil', 'CiPaw.01G191800' => 'cil', 'CiPaw.01G191900' => 'cil', 'CiPaw.03G047200' => 'cil', 'CiPaw.03G047300' => 'cil', 'CiPaw.04G030800' => 'cil', 'CiPaw.04G030900' => 'cil', 'CiPaw.04G031000' => 'cil', 'CiPaw.04G150900' => 'cil', 'CiPaw.05G178900' => 'cil', 'CiPaw.11G014700' => 'cil', 'CiPaw.11G014800' => 'cil', 'CiPaw.11G014900' => 'cil', 'CiPaw.12G033300' => 'cil', 'CiPaw.12G033400' => 'cil', 'CiPaw.16G094100' => 'cil', 'ClCG05G012900' => 'cla', 'ClCG06G006650' => 'cla', 'ClCG06G006660' => 'cla', 'ClCG06G006670' => 'cla', 'ClCG06G006680' => 'cla', 'ClCG06G006690' => 'cla', 'ClCG06G006710' => 'cla', 'ClCG06G017530' => 'cla', 'ClCG08G017610' => 'cla', 'COL.COLO4_16359' => 'col', 'COL.COLO4_18348' => 'col', 'COL.COLO4_19797' => 'col', 'COL.COLO4_23504' => 'col', 'COL.COLO4_23505' => 'col', 'COL.COLO4_29199' => 'col', 'COL.COLO4_29202' => 'col', 'Cpa.g.c45182' => 'cpa', 'Cpa.g.sc130.60' => 'cpa', 'Cpa.g.sc130.61' => 'cpa', 'Cpa.g.sc33.71' => 'cpa', 'Cpa.g.sc33.72' => 'cpa', 'Cpa.g.sc4.11' => 'cpa', 'Cpa.g.sc4.9' => 'cpa', 'CsaV3_1G000920' => 'csa', 'CsaV3_2G013080' => 'csa', 'CsaV3_2G013090' => 'csa', 'CsaV3_2G013120' => 'csa', 'CsaV3_2G013140' => 'csa', 'CsaV3_2G013160' => 'csa', 'CsaV3_2G013170' => 'csa', 'CsaV3_2G013180' => 'csa', 'CsaV3_2G025030' => 'csa', 'CsaV3_3G027580' => 'csa', 'CSS0005347' => 'camsi', 'CSS0007990' => 'camsi', 'CSS0013718' => 'camsi', 'CSS0018111' => 'camsi', 'CSS0024865' => 'camsi', 'CSS0024906' => 'camsi', 'CSS0025978' => 'camsi', 'CSS0030838' => 'camsi', 'CSS0034200' => 'camsi', 'CSS0035093' => 'camsi', 'CSS0035695' => 'camsi', 'CSS0037790' => 'camsi', 'CSS0044042' => 'camsi', 'CSS0044624' => 'camsi', 'CSS0047687' => 'camsi', 'CSS0049141' => 'camsi', 'CSS0050194' => 'camsi', 'DCAR_011271' => 'dca', 'DCAR_011272' => 'dca', 'DCAR_015068' => 'dca', 'DCAR_031169' => 'dca', 'Dinv11040' => 'din', 'Dinv14747' => 'din', 'Dinv16547' => 'din', 'Dinv25714' => 'din', 'Dinv27420' => 'din', 'Dinv33410' => 'din', 'Dinv33411' => 'din', 'Dinv33412' => 'din', 'Dinv38501' => 'din', 'Duzib068G0484' => 'dzi', 'Duzib106G0241' => 'dzi', 'Duzib128G0533' => 'dzi', 'Duzib128G0565' => 'dzi', 'Duzib147G0791' => 'dzi', 'Duzib147G0924' => 'dzi', 'Duzib187G1249' => 'dzi', 'Duzib205G1441' => 'dzi', 'Duzib248G0462' => 'dzi', 'Duzib264G0390' => 'dzi', 'Duzib268G0349' => 'dzi', 'ECA232G1814' => 'eca', 'ECA234G0015' => 'eca', 'ECA234G0223' => 'eca', 'ECA234G0608' => 'eca', 'ECA234G2902' => 'eca', 'ECA234G2993' => 'eca', 'ECA234G3033' => 'eca', 'ECA238G1971' => 'eca', 'ECA246G1348' => 'eca', 'ECA246G5141' => 'eca', 'ECA248G2275' => 'eca', 'EL10Ac2g03070' => 'bvu', 'EL10Ac4g08824' => 'bvu', 'EL10Ac4g08825' => 'bvu', 'EL10Ac4g09147' => 'bvu', 'EL10Ac7g18028' => 'bvu', 'EL10As2g23171' => 'bvu', 'Eucgr.B00151' => 'egr', 'Eucgr.B00175' => 'egr', 'Eucgr.B03241' => 'egr', 'Eucgr.B03242' => 'egr', 'Eucgr.G01580' => 'egr', 'Eucgr.H00199' => 'egr', 'Eucgr.H00200' => 'egr', 'Eucgr.H00201' => 'egr', 'Eucgr.H00202' => 'egr', 'Eucgr.H00204' => 'egr', 'Eucgr.H00205' => 'egr', 'Eucgr.H00206' => 'egr', 'Eucgr.H00209' => 'egr', 'Eucgr.H00211' => 'egr', 'Eucgr.H03162' => 'egr', 'Eucgr.H03163' => 'egr', 'Eucgr.H03164' => 'egr', 'Eucgr.H04052' => 'egr', 'Eucgr.H04053' => 'egr', 'Eucgr.I01709' => 'egr', 'Eucgr.I01711' => 'egr', 'Eucgr.I01712' => 'egr', 'Eucgr.I01713' => 'egr', 'Eucgr.I01714' => 'egr', 'Eucgr.I01715' => 'egr', 'Eucgr.L00852' => 'egr', 'Eucgr.L01341' => 'egr', 'FAN04G0168' => 'fan', 'FAN06G4356' => 'fan', 'FAN07G0480' => 'fan', 'FAN07G0614' => 'fan', 'FAN07G1396' => 'fan', 'FAN07G1531' => 'fan', 'FAN07G2432' => 'fan', 'FAN08G0842' => 'fan', 'FAN10G3496' => 'fan', 'FAN11G2647' => 'fan', 'FAN12G1729' => 'fan', 'FAN12G2024' => 'fan', 'FAN12G3881' => 'fan', 'FAN12G4284' => 'fan', 'FAN13G2086' => 'fan', 'FAN17G0093' => 'fan', 'FAN17G0208' => 'fan', 'FAN17G0776' => 'fan', 'FAN17G0971' => 'fan', 'FAN17G1035' => 'fan', 'FAN17G1162' => 'fan', 'FAN17G2181' => 'fan', 'FAN17G2191' => 'fan', 'FAN18G2188' => 'fan', 'FAN22G0127' => 'fan', 'FAN22G0435' => 'fan', 'FAN22G0970' => 'fan', 'FAN22G2002' => 'fan', 'FAN22G2171' => 'fan', 'FvH4_2g08821' => 'fve', 'FvH4_4g02370' => 'fve', 'FvH4_4g02430' => 'fve', 'FvH4_4g02460' => 'fve', 'FvH4_4g02480' => 'fve', 'FvH4_4g25290' => 'fve', 'FvH4_4g25310' => 'fve', 'FvH4_4g25320' => 'fve', 'FvH4_4g25330' => 'fve', 'FvH4_5g06500' => 'fve', 'FvH4_5g06680' => 'fve', 'FvH4_6g05920' => 'fve', 'FvH4_7g07630' => 'fve', 'FvH4_7g07640' => 'fve', 'Glyma.02G000700' => 'gma', 'Glyma.02G000751' => 'gma', 'Glyma.04G190300' => 'gma', 'Glyma.05G173166' => 'gma', 'Glyma.05G173232' => 'gma', 'Glyma.06G175200' => 'gma', 'Glyma.08G130500' => 'gma', 'Glyma.10G000400' => 'gma', 'Glyma.10G000500' => 'gma', 'Glyma.10G185500' => 'gma', 'Glyma.10G185600' => 'gma', 'Glyma.10G185700' => 'gma', 'Glyma.10G185800' => 'gma', 'Glyma.10G185850' => 'gma', 'Glyma.10G185900' => 'gma', 'Glyma.11G244200' => 'gma', 'Glyma.13G077151' => 'gma', 'Glyma.13G077200' => 'gma', 'Glyma.13G191100' => 'gma', 'Glyma.16G067700' => 'gma', 'Glyma.18G012800' => 'gma', 'Glyma.20G052900' => 'gma', 'Glyma.20G053000' => 'gma', 'Glyma.20G204400' => 'gma', 'Glyma.20G204500' => 'gma', 'Glyma.20G204800' => 'gma', 'Glyma.20G204900' => 'gma', 'Gohir.A03G004050' => 'ghi', 'Gohir.A03G004100' => 'ghi', 'Gohir.A03G004200' => 'ghi', 'Gohir.A03G004400' => 'ghi', 'Gohir.A03G005250' => 'ghi', 'Gohir.A03G005300' => 'ghi', 'Gohir.A03G063900' => 'ghi', 'Gohir.A03G133366' => 'ghi', 'Gohir.A03G135700' => 'ghi', 'Gohir.A05G353500' => 'ghi', 'Gohir.A05G353600' => 'ghi', 'Gohir.A05G391100' => 'ghi', 'Gohir.A08G224700' => 'ghi', 'Gohir.A10G160900' => 'ghi', 'Gohir.A11G035066' => 'ghi', 'Gohir.D02G156400' => 'ghi', 'Gohir.D02G156500' => 'ghi', 'Gohir.D03G102400' => 'ghi', 'Gohir.D03G167200' => 'ghi', 'Gohir.D03G167300' => 'ghi', 'Gohir.D03G168100' => 'ghi', 'Gohir.D03G168200' => 'ghi', 'Gohir.D03G168300' => 'ghi', 'Gohir.D04G026100' => 'ghi', 'Gohir.D04G059600' => 'ghi', 'Gohir.D04G059700' => 'ghi', 'Gohir.D04G059800' => 'ghi', 'Gohir.D08G245100' => 'ghi', 'Gohir.D10G085600' => 'ghi', 'Gohir.D11G038600' => 'ghi', 'Gorai.003G107900' => 'gra', 'Gorai.003G177000' => 'gra', 'Gorai.003G177800' => 'gra', 'Gorai.003G177900' => 'gra', 'Gorai.003G178000' => 'gra', 'Gorai.003G178100' => 'gra', 'Gorai.004G261600' => 'gra', 'Gorai.005G175200' => 'gra', 'Gorai.005G175300' => 'gra', 'Gorai.007G041500' => 'gra', 'Gorai.011G093700' => 'gra', 'Gorai.012G028700' => 'gra', 'Gorai.012G066200' => 'gra', 'Gorai.012G066300' => 'gra', 'Gorai.012G066400' => 'gra', 'GSVIVG01000576001' => 'vvi', 'GSVIVG01000577001' => 'vvi', 'GSVIVG01000578001' => 'vvi', 'GSVIVG01007594001' => 'vvi', 'GSVIVG01032348001' => 'vvi', 'GSVIVG01032352001' => 'vvi', 'GSVIVG01032353001' => 'vvi', 'GSVIVG01032357001' => 'vvi', 'GSVIVG01032359001' => 'vvi', 'GSVIVG01032360001' => 'vvi', 'HanXRQChr05g0156171' => 'han', 'HanXRQChr07g0199051' => 'han', 'HanXRQChr07g0199061' => 'han', 'HanXRQChr07g0199071' => 'han', 'HanXRQChr08g0235211' => 'han', 'HanXRQChr12g0385781' => 'han', 'HanXRQChr13g0404591' => 'han', 'HanXRQChr14g0451081' => 'han', 'HanXRQChr17g0540141' => 'han', 'HanXRQChr17g0569431' => 'han', 'HanXRQChr17g0569451' => 'han', 'HanXRQChr17g0569461' => 'han', 'HanXRQChr17g0569991' => 'han', 'Haze_07629' => 'cav', 'Haze_11280' => 'cav', 'Haze_11282' => 'cav', 'Haze_11283' => 'cav', 'Haze_11285' => 'cav', 'Haze_12283' => 'cav', 'Haze_12346' => 'cav', 'Haze_12347' => 'cav', 'Haze_13414' => 'cav', 'Haze_14752' => 'cav', 'Haze_14776' => 'cav', 'Hma1.2p1_0046F.1_g027360' => 'hma', 'Hma1.2p1_0054F.1_g031000' => 'hma', 'Hma1.2p1_0079F.1_g041185' => 'hma', 'Hma1.2p1_0279F.1_g111970' => 'hma', 'HPP92_024525' => 'vpl', 'Hund05610' => 'sun', 'Hund05611' => 'sun', 'Hund06046' => 'sun', 'Hund06837' => 'sun', 'Hund06838' => 'sun', 'Hund06839' => 'sun', 'Hund06841' => 'sun', 'Hund18509' => 'sun', 'Hund25408' => 'sun', 'Lalb_Chr01g0020791' => 'lal', 'Lalb_Chr02g0150421' => 'lal', 'Lalb_Chr02g0150431' => 'lal', 'Lalb_Chr02g0150441' => 'lal', 'Lalb_Chr03g0037881' => 'lal', 'Lalb_Chr08g0230851' => 'lal', 'Lalb_Chr08g0236861' => 'lal', 'Lalb_Chr11g0069901' => 'lal', 'Lalb_Chr21g0312311' => 'lal', 'Lj1C1124T5' => 'lonja', 'Lj1g0007841' => 'lja', 'Lj1g0016650' => 'lja', 'Lj3A1062T96' => 'lonja', 'Lj5A133T94' => 'lonja', 'Lj5g0003725' => 'lja', 'Lj5g0014537' => 'lja', 'Lj5g0015603' => 'lja', 'Lj5g0018723' => 'lja', 'Lj5g0026654' => 'lja', 'Lj6C815T6' => 'lonja', 'Lj6g0008663' => 'lja', 'Lj6g0012860' => 'lja', 'Lj6g0024498' => 'lja', 'Lj7A603T65' => 'lonja', 'Lju41A44T84' => 'lonja', 'Lsat_1_v5_gn_2_90981' => 'lsa', 'Lsat_1_v5_gn_2_91021' => 'lsa', 'Lsat_1_v5_gn_3_30081' => 'lsa', 'Lsat_1_v5_gn_4_3881' => 'lsa', 'Lsat_1_v5_gn_5_12800' => 'lsa', 'Lsat_1_v5_gn_5_169580' => 'lsa', 'Lsat_1_v5_gn_5_90081' => 'lsa', 'Lsat_1_v5_gn_6_14061' => 'lsa', 'Lsat_1_v5_gn_8_140441' => 'lsa', 'Lsat_1_v5_gn_9_71080' => 'lsa', 'Lsat_1_v5_gn_9_71101' => 'lsa', 'Manes.12G020100' => 'mes', 'Manes.12G020200' => 'mes', 'Manes.13G020500' => 'mes', 'Manes.15G153300' => 'mes', 'Manes.15G153400' => 'mes', 'Manes.17G109500' => 'mes', 'Manes.17G109600' => 'mes', 'Manes.17G109700' => 'mes', 'MBI06_g02333_MAGBIO' => 'mbi', 'MBI06_g17806_MAGBIO' => 'mbi', 'MBI10_g26750_MAGBIO' => 'mbi', 'MBI10_g30158_MAGBIO' => 'mbi', 'MD00G1111000' => 'mdo', 'MD06G1161800' => 'mdo', 'MD08G1225800' => 'mdo', 'MD13G1105000' => 'mdo', 'MD13G1105100' => 'mdo', 'MD13G1205700' => 'mdo', 'MD13G1205800' => 'mdo', 'MD13G1205900' => 'mdo', 'MD13G1206000' => 'mdo', 'MD14G1167500' => 'mdo', 'MD14G1167600' => 'mdo', 'MD16G1104700' => 'mdo', 'MD16G1104800' => 'mdo', 'MD16G1105000' => 'mdo', 'MD16G1207500' => 'mdo', 'MD16G1207600' => 'mdo', 'Medtr1g040360' => 'mtr', 'Medtr1g074950' => 'mtr', 'Medtr1g074990' => 'mtr', 'Medtr1g075030' => 'mtr', 'Medtr1g075095' => 'mtr', 'Medtr1g075153' => 'mtr', 'Medtr1g075170' => 'mtr', 'Medtr1g075180' => 'mtr', 'Medtr1g075230' => 'mtr', 'Medtr3g075450' => 'mtr', 'Medtr7g032660' => 'mtr', 'Medtr8g089660' => 'mtr', 'MELO3C010700.2' => 'cme', 'MELO3C014790.2' => 'cme', 'MELO3C026244.2' => 'cme', 'MELO3C026765.2' => 'cme', 'MELO3C026766.2' => 'cme', 'MELO3C026768.2' => 'cme', 'MELO3C026769.2' => 'cme', 'MELO3C026770.2' => 'cme', 'MELO3C026773.2' => 'cme', 'MELO3C026775.2' => 'cme', 'Migut.D02031' => 'egut', 'Migut.E00217' => 'egut', 'Migut.E00218' => 'egut', 'Migut.E00219' => 'egut', 'MSTRG.13338' => 'ama', 'MSTRG.2435' => 'ama', 'MSTRG.2436' => 'ama', 'MSTRG.2437' => 'ama', 'MSTRG.2438' => 'ama', 'MSTRG.2439' => 'ama', 'MSTRG.4341' => 'ama', 'MSTRG.550' => 'ama', 'Nitab4.5_0000025g0190' => 'nta', 'Nitab4.5_0000229g0030' => 'nta', 'Nitab4.5_0000510g0080' => 'nta', 'Nitab4.5_0000510g0150' => 'nta', 'Nitab4.5_0000774g0040' => 'nta', 'Nitab4.5_0003542g0070' => 'nta', 'Nitab4.5_0003542g0090' => 'nta', 'Nitab4.5_0003917g0020' => 'nta', 'Nn3g16646' => 'nnu', 'Nn3g16647' => 'nnu', 'Nn4g22091' => 'nnu', 'Nn4g22533' => 'nnu', 'Nn4g22534' => 'nnu', 'Nn8g40186' => 'nnu', 'Nn8g40283' => 'nnu', 'Nn8g40285' => 'nnu', 'Nn8g40303' => 'nnu', 'Nn8g40304' => 'nnu', 'Oeu004666.1' => 'oeu', 'Oeu040907.1' => 'oeu', 'Oeu046959.1' => 'oeu', 'Oeu046965.1' => 'oeu', 'Oeu046967.1' => 'oeu', 'Oeu046968.1' => 'oeu', 'Oeu046972.1' => 'oeu', 'Oeu063272.1' => 'oeu', 'Peaxi162Scf00089g01126' => 'pax', 'Peaxi162Scf00128g00056' => 'pax', 'Peaxi162Scf00128g00544' => 'pax', 'Peaxi162Scf00801g00078' => 'pax', 'PGR083G1469' => 'pgr', 'PGR102G1000' => 'pgr', 'PGR102G3023' => 'pgr', 'PGR142G0685' => 'pgr', 'PGR142G0691' => 'pgr', 'PGR142G1611' => 'pgr', 'PGR142G2690' => 'pgr', 'PGR142G2833' => 'pgr', 'PGR142G3570' => 'pgr', 'PGSC0003DMG400015156' => 'stu', 'PGSC0003DMG400016967' => 'stu', 'PGSC0003DMG400016971' => 'stu', 'PGSC0003DMG400016972' => 'stu', 'Phvul.001G256100' => 'pvu', 'Phvul.002G258300' => 'pvu', 'Phvul.006G021400' => 'pvu', 'Phvul.006G021500' => 'pvu', 'Phvul.007G280500' => 'pvu', 'Phvul.007G280600' => 'pvu', 'Phvul.008G147900' => 'pvu', 'Phvul.008G217900' => 'pvu', 'Phvul.009G171300' => 'pvu', 'Phvul.L001759' => 'pvu', 'Phvul.L002259' => 'pvu', 'Phvul.L002359' => 'pvu', 'Phvul.L002459' => 'pvu', 'Phvul.L004037' => 'pvu', 'Phvul.L004137' => 'pvu', 'Potri.001G340200' => 'ptr', 'Potri.001G340300' => 'ptr', 'Potri.001G340400' => 'ptr', 'Potri.001G340500' => 'ptr', 'Potri.001G340600' => 'ptr', 'Potri.008G183200' => 'ptr', 'Potri.010G050200' => 'ptr', 'Potri.010G050300' => 'ptr', 'Potri.010G050501' => 'ptr', 'Potri.010G050701' => 'ptr', 'Potri.012G090400' => 'ptr', 'Potri.017G071000' => 'ptr', 'Prupe.1G028400' => 'ppe', 'Prupe.1G028500' => 'ppe', 'Prupe.1G028800' => 'ppe', 'Prupe.1G028900' => 'ppe', 'Prupe.1G029000' => 'ppe', 'Prupe.1G029100' => 'ppe', 'Prupe.1G029200' => 'ppe', 'Prupe.1G029500' => 'ppe', 'Prupe.1G029600' => 'ppe', 'Prupe.1G029700' => 'ppe', 'Prupe.1G166000' => 'ppe', 'Prupe.1G202900' => 'ppe', 'Prupe.1G241400' => 'ppe', 'Prupe.1G241500' => 'ppe', 'Prupe.1G241600' => 'ppe', 'Prupe.5G162100' => 'ppe', 'Psat0s1411g0080' => 'psa', 'Psat5g118120' => 'psa', 'Psat6g102920' => 'psa', 'Psat6g128240' => 'psa', 'Psat6g128280' => 'psa', 'Psat6g128320' => 'psa', 'Psat6g128360' => 'psa', 'Psat6g133840' => 'psa', 'Psat6g133880' => 'psa', 'Psat6g133920' => 'psa', 'Psat6g218240' => 'psa', 'Psat7g059000' => 'psa', 'PSO063G0386' => 'pso', 'PSO063G5069' => 'pso', 'PSO067G0059' => 'pso', 'PSO067G0072' => 'pso', 'PSO067G0095' => 'pso', 'PSO210G7473' => 'pso', 'QL02p073568' => 'qlo', 'QL02p073580' => 'qlo', 'QL02p073631' => 'qlo', 'QL02p073651' => 'qlo', 'QL02p073697' => 'qlo', 'QL02p073720' => 'qlo', 'QL02p078777' => 'qlo', 'QL02p078838' => 'qlo', 'QL02p078901' => 'qlo', 'QL02p078964' => 'qlo', 'QL03p030631' => 'qlo', 'QL03p030679' => 'qlo', 'QL03p030711' => 'qlo', 'QL03p030721' => 'qlo', 'QL03p031135' => 'qlo', 'QL03p031354' => 'qlo', 'QL03p056317' => 'qlo', 'QL03p056352' => 'qlo', 'QL03p056367' => 'qlo', 'QL05p006982' => 'qlo', 'QL05p006997' => 'qlo', 'QL05p007006' => 'qlo', 'QL05p007021' => 'qlo', 'QL05p007029' => 'qlo', 'QL05p007065' => 'qlo', 'QL05p007069' => 'qlo', 'QL05p007108' => 'qlo', 'QL05p007135' => 'qlo', 'QL05p016640' => 'qlo', 'QL06p015345' => 'qlo', 'QL06p015361' => 'qlo', 'QL06p015367' => 'qlo', 'QL06p015408' => 'qlo', 'QL06p015434' => 'qlo', 'QL06p015469' => 'qlo', 'QL06p015499' => 'qlo', 'QL06p015507' => 'qlo', 'QL06p015544' => 'qlo', 'QL06p015565' => 'qlo', 'QL06p015587' => 'qlo', 'QL10p005950' => 'qlo', 'RcHm_v2.0_Chr4g0389751' => 'rch', 'RcHm_v2.0_Chr4g0389771' => 'rch', 'RcHm_v2.0_Chr4g0389791' => 'rch', 'RcHm_v2.0_Chr4g0389851' => 'rch', 'RcHm_v2.0_Chr4g0389861' => 'rch', 'RcHm_v2.0_Chr4g0389881' => 'rch', 'RcHm_v2.0_Chr4g0389901' => 'rch', 'RcHm_v2.0_Chr4g0389961' => 'rch', 'RcHm_v2.0_Chr4g0400271' => 'rch', 'RcHm_v2.0_Chr4g0400571' => 'rch', 'RcHm_v2.0_Chr4g0412411' => 'rch', 'RcHm_v2.0_Chr4g0432561' => 'rch', 'RcHm_v2.0_Chr4g0432571' => 'rch', 'RcHm_v2.0_Chr4g0432611' => 'rch', 'RcHm_v2.0_Chr4g0432621' => 'rch', 'RcHm_v2.0_Chr7g0191981' => 'rch', 'Rhsim05G0211900' => 'rsi', 'Rhsim05G0212000' => 'rsi', 'Rhsim05G0212300' => 'rsi', 'Rhsim05G0212400' => 'rsi', 'Rhsim08G0047800' => 'rsi', 'Rhsim08G0047900' => 'rsi', 'Rhsim08G0180500' => 'rsi', 'Rhsim08G0180700' => 'rsi', 'Rhsim08G0181000' => 'rsi', 'Rhsim10G0033600' => 'rsi', 'Rhsim10G0033800' => 'rsi', 'Rhsim10G0037900' => 'rsi', 'Rhsim10G0038000' => 'rsi', 'Sabra08G0139400' => 'sbr', 'Sabra10G0019200' => 'sbr', 'Sabra10G0019300' => 'sbr', 'Sabra10G0019400' => 'sbr', 'Sabra12G0065200' => 'sbr', 'Sabra16G0220200' => 'sbr', 'Sabra16G0220300' => 'sbr', 'Sabra16G0220400' => 'sbr', 'Sabra16G0220500' => 'sbr', 'Sabra16G0220700' => 'sbr', 'Sabra16G0221000' => 'sbr', 'Sabra17G0063100' => 'sbr', 'Sabra17G0063500' => 'sbr', 'SalBow2G2866' => 'sbo', 'SalBow6G3544' => 'sbo', 'SalBow6G3812' => 'sbo', 'SalBow6G6236' => 'sbo', 'SalBow8G0637' => 'sbo', 'SalBow8G0895' => 'sbo', 'SalBow8G1767' => 'sbo', 'SalBow8G3666' => 'sbo', 'Sc04g0009700' => 'sci', 'Sc04g0009710' => 'sci', 'Sc07g0004350' => 'sci', 'Sc09g0007030' => 'sci', 'Sc09g0007160' => 'sci', 'Sc10g0010250' => 'sci', 'Sc10g0010260' => 'sci', 'Sc10g0010270' => 'sci', 'Sc14g0008810' => 'sci', 'Sc16g0003780' => 'sci', 'Sed0002132' => 'sed', 'Sed0003242' => 'sed', 'Sed0005856' => 'sed', 'Sed0006139' => 'sed', 'Sed0009120' => 'sed', 'Sed0009121' => 'sed', 'Sed0009385' => 'sed', 'Sed0012660' => 'sed', 'Sed0014959' => 'sed', 'Sed0016474' => 'sed', 'Sed0019718' => 'sed', 'Sed0021989' => 'sed', 'Sed0023328' => 'sed', 'Sed0023972' => 'sed', 'Sed0026198' => 'sed', 'SEGI_18320' => 'sgi', 'SGA_v2.0_scaffold7G04169' => 'sas', 'SGA_v2.0_scaffold87G27048' => 'sas', 'SGA_v2.0_scaffold87G27055' => 'sas', 'SGA_v2.0_scaffold87G27057' => 'sas', 'SHI05369' => 'shi', 'Solyc03g111810.2' => 'sly', 'Solyc03g111815.1' => 'sly', 'Solyc04g026020.3' => 'sly', 'Solyc05g013850.2' => 'sly', 'Solyc05g013860.4' => 'sly', 'Solyc05g013870.4' => 'sly', 'Sopen03g030910' => 'spe', 'Sopen03g030920' => 'spe', 'Sopen04g013790' => 'spe', 'Sopen05g008770' => 'spe', 'Sopen05g008790' => 'spe', 'Sopen05g008800' => 'spe', 'Sp3g00370' => 'spa', 'Sp3g00380' => 'spa', 'Sp5g22800' => 'spa', 'TAR374G0229' => 'tar', 'TAR622G0284' => 'tar', 'TAR622G1041' => 'tar', 'TAR622G1270' => 'tar', 'TAR622G1288' => 'tar', 'TAR629G2170' => 'tar', 'TAR629G3134' => 'tar', 'THA.LOC104802389' => 'tha', 'THA.LOC104805029' => 'tha', 'THA.LOC104821100' => 'tha', 'THA.LOC104821101' => 'tha', 'THA.LOC104825547' => 'tha', 'THA.LOC104825586' => 'tha', 'Thecc.02G265800' => 'tca', 'Thecc.02G265900' => 'tca', 'Thecc.03G118300' => 'tca', 'Thecc.04G022200' => 'tca', 'Thecc.04G022300' => 'tca', 'Thecc.05G193500' => 'tca', 'Thecc.05G200600' => 'tca', 'Thecc.05G200700' => 'tca', 'Thhalv10019754m.g' => 'esa', 'Thhalv10020071m.g' => 'esa', 'Thhalv10020146m.g' => 'esa', 'TPR.G1135' => 'tpr', 'TPR.G21508' => 'tpr', 'TPR.G21844' => 'tpr', 'TPR.G224' => 'tpr', 'TPR.G22483' => 'tpr', 'TPR.G24769' => 'tpr', 'TPR.G28506' => 'tpr', 'TPR.G28886' => 'tpr', 'TPR.G28887' => 'tpr', 'TPR.G28888' => 'tpr', 'TPR.G28890' => 'tpr', 'TPR.G28893' => 'tpr', 'TPR.G28894' => 'tpr', 'TPR.G28897' => 'tpr', 'TPR.G28898' => 'tpr', 'TPR.G29971' => 'tpr', 'TPR.G6293' => 'tpr', 'TPR.G7512' => 'tpr', 'TWI12G0679' => 'twi', 'TWI18G0878' => 'twi', 'TWI36G0466' => 'twi', 'TWI36G0544' => 'twi', 'TWI36G1313' => 'twi', 'TWI36G1373' => 'twi', 'TWI56G0428' => 'twi', 'TWI75G0829' => 'twi', 'TWI79G1529' => 'twi', 'unitig_21.g20400' => 'ugi', 'vmacro16162' => 'vma', 'vmacro16166' => 'vma', 'vmacro18300' => 'vma', 'vmacro18301' => 'vma', 'vmacro19273' => 'vma', 'VMungo0251G3150' => 'vmu', 'VMungo0540G0649' => 'vmu', 'VMungo0540G0656' => 'vmu', 'VMungo0540G0835' => 'vmu', 'VMungo0720G0609' => 'vmu', 'VMungo0720G1077' => 'vmu', 'VMungo0720G1150' => 'vmu', 'VMungo0720G1689' => 'vmu', 'VMungo0720G1709' => 'vmu', 'VMungo0720G2368' => 'vmu', 'VMungo0720G2844' => 'vmu', 'VMungo0720G3187' => 'vmu', 'VMungo1215G2527' => 'vmu', 'VMungo1309G1935' => 'vmu', 'VMungo1383G3496' => 'vmu', 'VMungo1383G3717' => 'vmu' ) $gf_id = 'HOM05D000615' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000615' ) $data_identifier = 'HOM05D000615' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 7, 'aly' => (int) 3, 'aox' => (int) 7, 'arhy' => (int) 37, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 19, 'bca' => (int) 9, 'bol' => (int) 2, 'bra' => (int) 4, 'can' => (int) 3, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 11, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 24, 'ccl' => (int) 8, 'cil' => (int) 24, 'cla' => (int) 9, 'col' => (int) 7, 'cpa' => (int) 7, 'csa' => (int) 10, 'camsi' => (int) 17, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 11, 'eca' => (int) 11, 'bvu' => (int) 6, 'egr' => (int) 27, 'fan' => (int) 29, 'fve' => (int) 14, 'gma' => (int) 27, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 10, 'han' => (int) 13, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 9, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 8, 'mbi' => (int) 4, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 8, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 8, 'pax' => (int) 4, 'pgr' => (int) 9, 'stu' => (int) 4, 'pvu' => (int) 15, 'ptr' => (int) 12, 'ppe' => (int) 16, 'psa' => (int) 12, 'pso' => (int) 6, 'qlo' => (int) 41, 'rch' => (int) 16, 'rsi' => (int) 13, 'sbr' => (int) 13, 'sbo' => (int) 8, 'sci' => (int) 10, 'sed' => (int) 15, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 8, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 9, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 16 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo1383G3717' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1